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samtools sort  (WholeGenome LLC)

 
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    WholeGenome LLC samtools sort
    Samtools Sort, supplied by WholeGenome LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/samtools+sort/samtools+sort/pm39922809-233-58-28
    Average 90 stars, based on 1 article reviews
    samtools sort - by Bioz Stars, 2026-09
    90/100 stars

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    other:

    Article Title: Unravelling single-cell DNA replication timing dynamics using machine learning reveals heterogeneity in cancer progression.
    Article Snippet: A schematic representation of MnMmain steps (Fig. 1) illustrates that the combination of deep learning, UMAP, DBSCAN and KNN algorithms allows uncovering replication states and subpopulations from single-cell wholegenome copy number calling data (detailed in the following sections). scWGS demultiplexing The BAM files of hg19-aligned GM12878 B-cell data from ref. 38. were obtained, sorted by read name with samtools66 sort (v. 1.16.1; option -n) and converted to fastq files with samtools fastq (options -T CB --barcode-tag CB) to transcribe the barcodes to the fastq headers from the BAM headers for alignment to the hg38 reference genome, as indicated below.



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